Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0219235

https://doi.org/10.1371/journal.pone.0219235

Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

Cited by: 17
Author(s): Stephen Woloszynek, Joshua Chang Mell, Zhengqiao Zhao, Gideon Simpson, Michael O’Connor, Gail Rosen
Published: almost 5 years ago

Software Mentions 7

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: stm
Estimation of the Structural Topic Model
Papers that mentioned: 12
cran: themetagenomics
Papers that mentioned: 2
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
pypi: stm
A software transactional memory library
Papers that mentioned: 12