Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0183417

https://doi.org/10.1371/journal.pone.0183417

Association of gene expression with biomass content and composition in sugarcane

Cited by: 23
Author(s): Nam V. Hoang, Agnelo Furtado, Angela O'Keeffe, Frederik C. Botha, Robert J. Henry
Published: about 7 years ago

Software Mentions 15

bioconductor: Biobase

Biobase: Base functions for Bioconductor
Papers that mentioned: 104

bioconductor: ctc

Cluster and Tree Conversion.
Papers that mentioned: 5

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

cran: ape

Analyses of Phylogenetics and Evolution
Papers that mentioned: 918

cran: cluster

"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416

cran: gplots

Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122

cran: Mercator

Clustering and Visualizing Distance Matrices
Papers that mentioned: 347

pypi: analysis

Source code analysis of Python programs
Papers that mentioned: 2,036

pypi: ape

A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918

pypi: cluster

Papers that mentioned: 416

pypi: ctc

ctc is a tool for collecting and processing historical EVM data
Papers that mentioned: 5

pypi: qbase

qq based programe for fun
Papers that mentioned: 115

pypi: sam

Time series anomaly detection and forecasting
Papers that mentioned: 28

pypi: seqtk

seqtk provides various tools for Sequence.
Papers that mentioned: 213