Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0179613

https://doi.org/10.1371/journal.pone.0179613

A data analysis framework for biomedical big data: Application on mesoderm differentiation of human pluripotent stem cells

Cited by: 7
Author(s): Benjamin Ulfenborg, Alexander Karlsson, Maria Riveiro, Caroline Améen, Karolina Åkesson, Christian X. Andersson, Peter Sartipy, Jane Synnergren
Published: over 7 years ago

Software Mentions 5

bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
cran: amap
Another Multidimensional Analysis Package
Papers that mentioned: 37
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: amap
Automated mouse atlas propagation
Papers that mentioned: 37
pypi: kmeans
python wrapper for basic c implementation of kmeans
Papers that mentioned: 62