Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0143742

https://doi.org/10.1371/journal.pone.0143742

Functional Cross-Talking between Differentially Expressed and Alternatively Spliced Genes in Human Liver Cancer Cells Treated with Berberine

Cited by: 11
Author(s): Zhonghua Sheng, Yi Sun, Ruixin Zhu, Na Jiao, Kailin Tang, Zhen Cao, Chao Ma
Published: almost 9 years ago

Software Mentions 4

bioconductor: DEGseq
Identify Differentially Expressed Genes from RNA-seq data
Papers that mentioned: 697
bioconductor: GOSemSim
GO-terms Semantic Similarity Measures
Papers that mentioned: 118
pypi: AltAnalyze
User Friendly Application for Comprehensive Transcriptome Analysis
Papers that mentioned: 102
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071