Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0081925

https://doi.org/10.1371/journal.pone.0081925

Gene Expression, Single Nucleotide Variant and Fusion Transcript Discovery in Archival Material from Breast Tumors

Cited by: 51
Author(s): Nadine Norton, Zhifu Sun, Yan W. Asmann, Daniel J. Serie, Brian M. Necela, Aditya Bhagwate, Jin Jen, Bruce W. Eckloff, Krishna R. Kalari, Kevin J. Thompson, Jennifer M. Carr, Jennifer M. Kachergus, Xochiquetzal J. Geiger, Edith A. Perez, E. Aubrey Thompson
Published: about 11 years ago

Software Mentions 3

bioconductor: aroma.light
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Papers that mentioned: 4
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017