Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0079217

https://doi.org/10.1371/journal.pone.0079217

Cited by: 154
Author(s): Adi L. Tarca, Gaurav Bhatti, Roberto Romero
Published: over 10 years ago

Software Mentions 12

bioconductor: CAMERA
Collection of annotation related methods for mass spectrometry data
Papers that mentioned: 429
bioconductor: gage
Generally Applicable Gene-set Enrichment for Pathway Analysis
Papers that mentioned: 45
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
bioconductor: KEGGREST
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
Papers that mentioned: 75
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: PADOG
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
Papers that mentioned: 19
bioconductor: safe
Significance Analysis of Function and Expression
Papers that mentioned: 4
bioconductor: sigPathway
Pathway Analysis
Papers that mentioned: 15
cran: GSA
Gene Set Analysis
Papers that mentioned: 285
pypi: GSA
Python Package to implement Gravitational Search Algorithm. Documentation at:https://github.com/deepanshu1999/GSA
Papers that mentioned: 285
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893