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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.pone.0056024

https://doi.org/10.1371/journal.pone.0056024

Novel Pancreatic Endocrine Maturation Pathways Identified by Genomic Profiling and Causal Reasoning

Cited by: 14
Author(s): Alex Gutteridge, J. Michael Rukstalis, Daniel Ziemek, Mark Tié, Lin Ji, Rebeca Ramos-Zayas, Nancy A. Nardone, Lisa D. Norquay, Martin Brenner, Kim San Tang, John D. McNeish, Rebecca K. Rowntree
Published: over 12 years ago

Software Mentions 9

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
Very Likely Science (83)
bioconductor: beadarray
Quality assessment and low-level analysis for Illumina BeadArray data
Papers that mentioned: 94
Very Likely Science (100)
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: ShortRead
FASTQ input and manipulation
Papers that mentioned: 119
Very Likely Science (90)
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
Very Likely Science (100)
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
Very Likely Science (100)
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
Very Likely Science (100)
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
Very Likely Science (75)