Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0041762

https://doi.org/10.1371/journal.pone.0041762

Large-scale identification of microRNA targets in murine Dgcr8-deficient embryonic stem cell lines.

Cited by: 7
Author(s): Matthew P Davis, Cei Abreu‐Goodger, Stijn van Dongen, Dong Lu, P. Täte, Nenad Bartoniček, Claudia Kutter, Pentao Liu, William C. Skarnes, Anton J. Enright, Ian Dunham
Published: almost 13 years ago

Software Mentions 10

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: Biobase
Biobase: Base functions for Bioconductor
Papers that mentioned: 104
bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: ShortRead
FASTQ input and manipulation
Papers that mentioned: 119
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: MCL
Markov Cluster Algorithm
Papers that mentioned: 563
cran: R2HTML
HTML Exportation for R Objects
Papers that mentioned: 6
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490