Papers: 10.1371/journal.pone.0012657

https://doi.org/10.1371/journal.pone.0012657

A Comprehensive and Universal Method for Assessing the Performance of Differential Gene Expression Analyses

Cited by: 13
Author(s): Mikhail G. Dozmorov, Joel M. Guthridge, Robert E. Hurst, Igor Dozmorov
Published: about 16 years ago

Software Mentions 6

bioconductor: affy
Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989
Very Likely Science (98)
bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
Very Likely Science (83)
bioconductor: diffGeneAnalysis
Performs differential gene expression Analysis
Papers that mentioned: 3
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: vsn
Variance stabilization and calibration for microarray data
Papers that mentioned: 91
Very Likely Science (100)
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
Very Likely Science (85)