Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1009331

https://doi.org/10.1371/journal.pgen.1009331

A 12 kb multi-allelic copy number variation encompassing a GC gene enhancer is associated with mastitis resistance in dairy cattle

Cited by: 20
Author(s): Young Lim Lee, Hitoshi Takeda, Gabriel Costa Monteiro Moreira, Latifa Karim, Erik Mullaart, Wouter Coppieters, Ruth Appeltant, R.F. Veerkamp, Martien A. M. Groenen, Michel Georges, Mirte Bosse, Tom Druet, A.C. Bouwman, Carole Charlier
Published: over 3 years ago

Software Mentions 7

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: rehh
Searching for Footprints of Selection using 'Extended Haplotype Homozygosity' Based Tests
Papers that mentioned: 57
cran: RZooRoH
Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes
Papers that mentioned: 4
cran: SMR
Externally Studentized Midrange Distribution
Papers that mentioned: 65
pypi: Lumpy

Papers that mentioned: 60
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779