Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1006231

https://doi.org/10.1371/journal.pgen.1006231

Linking Core Promoter Classes to Circadian Transcription

Cited by: 7
Author(s): Pål O. Westermark
Published: over 8 years ago

Software Mentions 5

bioconductor: CAGEr
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Papers that mentioned: 27
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
bioconductor: profileScoreDist
Profile score distributions
Papers that mentioned: 1
cran: HarmonicRegression
Harmonic Regression to One or more Time Series
Papers that mentioned: 2
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283