Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1006224

https://doi.org/10.1371/journal.pgen.1006224

Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters

Cited by: 16
Author(s): Christopher A. Lavender, Kimberly R. Cannady, Jackson A. Hoffman, Kevin W. Trotter, Daniel A. Gilchrist, Brian D. Bennett, Adam Burkholder, Craig J. Burd, David C. Fargo, Trevor Archer
Published: over 8 years ago

Software Mentions 3

cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017