Papers: 10.1371/journal.pcbi.1008173

https://doi.org/10.1371/journal.pcbi.1008173

Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data

Cited by: 53
Author(s): Hyeon Jin Kim, Galip Gürkan Yardımcı, Giancarlo Bonora, Vijay Ramani, Jie Liu, Ruolan Qiu, Choli Lee, Jennifer Hesson, Carol B. Ware, Jay Shendure, Zhijun Duan
Published: about 6 years ago

Software Mentions 2

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
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cran: STAR
Spike Train Analysis with R
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