Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1007859

https://doi.org/10.1371/journal.pcbi.1007859

Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease

Cited by: 10
Author(s): Christine Tataru, Maude M. David
Published: over 4 years ago

Software Mentions 13

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: KEGGREST
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
Papers that mentioned: 75
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
cran: stylo
Stylometric Multivariate Analyses
Papers that mentioned: 2
pypi: Gtools
UNKNOWN
Papers that mentioned: 2
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
pypi: plyr
UNKNOWN
Papers that mentioned: 468
pypi: stylo
Drawing images with a blend of Python and Mathematics
Papers that mentioned: 2