Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1007753

https://doi.org/10.1371/journal.pcbi.1007753

Hydra: A mixture modeling framework for subtyping pediatric cancer cohorts using multimodal gene expression signatures

Cited by: 1
Author(s): Jacob Pfeil, Lauren Sanders, Ioannis N. Anastopoulos, A. Geoffrey Lyle, Alana S. Weinstein, Yuanqing Xue, Andrew Blair, Holly C. Beale, Alex Lee, Stanley G. Leung, Phuong Dinh, Avanthi Tayi Shah, Marcus R. Breese, W. Patrick Devine, Isabel Bjork, Sofie R. Salama, E. Alejandro Sweet-Cordero, David Haussler, Olena M. Vaske
Published: over 4 years ago

Software Mentions 12

bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
cran: hydra
Hyperbolic Embedding
Papers that mentioned: 7
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473
pypi: analysis
Source code analysis of Python programs
Papers that mentioned: 2,036
pypi: bnpy
Bayesian nonparametric machine learning for Python
Papers that mentioned: 1
pypi: gene
gene
Papers that mentioned: 185
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
pypi: Hydra
A high performance persistent bloom filter
Papers that mentioned: 84
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
pypi: treehouse
High-performance tree traversal
Papers that mentioned: 2