Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1003706

https://doi.org/10.1371/journal.pcbi.1003706

Metagenomic Data Utilization and Analysis (MEDUSA) and Construction of a Global Gut Microbial Gene Catalogue

Cited by: 54
Author(s): Fredrik Karlsson, Intawat Nookaew, Jens Nielsen
Published: over 10 years ago

Software Mentions 7

bioconductor: GEM
GEM: fast association study for the interplay of Gene, Environment and Methylation
Papers that mentioned: 317
cran: ade4
Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences
Papers that mentioned: 809
pypi: fastx
Just a simple kseq.h binding
Papers that mentioned: 197
pypi: linux

Papers that mentioned: 450
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: velvet
Beautiful signal processing and communications algorithms in Python
Papers that mentioned: 156