Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1003000

https://doi.org/10.1371/journal.pcbi.1003000

Transcriptome Profiling of Giardia intestinalis Using Strand-specific RNA-Seq

Cited by: 55
Author(s): Oscar Franzén, Jon Jerlström-Hultqvist, Elin Einarsson, Johan Ankarklev, Marcela Ferella, Björn Andersson, Staffan G. Svärd
Published: over 11 years ago

Software Mentions 13

bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: multtest
Resampling-based multiple hypothesis testing
Papers that mentioned: 158
cran: ade4
Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences
Papers that mentioned: 809
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: IDPmisc
'Utilities of Institute of Data Analyses and Process Design (www.zhaw.ch/idp)'
Papers that mentioned: 2
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: cufflinks
Productivity Tools for Plotly + Pandas
Papers that mentioned: 415
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: house
A lib to persist blobs by their sha256
Papers that mentioned: 960
pypi: mantel
Python implementation of the Mantel test, a significance test of the correlation between two distance matrices
Papers that mentioned: 12
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017