Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1002638

https://doi.org/10.1371/journal.pcbi.1002638

High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints

Cited by: 255
Author(s): Yuchun Guo, Shaun Mahony, David K. Gifford
Published: over 12 years ago

Software Mentions 5

bioconductor: GEM

GEM: fast association study for the interplay of Gene, Environment and Methylation
Papers that mentioned: 317

cran: JASPAR

R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283

pypi: MACS

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233

pypi: Quest

UNKNOWN
Papers that mentioned: 197

pypi: STAMP

A graphical software package for analyzing taxonomic and functional profiles.
Papers that mentioned: 1,190