Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pbio.3000741

https://doi.org/10.1371/journal.pbio.3000741

Cell-based and multi-omics profiling reveals dynamic metabolic repurposing of mitochondria to drive developmental progression of Trypanosoma brucei

Cited by: 32
Author(s): Eva Doleželová, Michaela Kunzová, Mario Dejung, Michal Levin, Brian Panicucci, Clément Regnault, Christian J. Janzen, Michael P. Barrett, Falk Butter, Alena Zı́ková
Published: over 4 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: dupRadar
Assessment of duplication rates in RNA-Seq datasets
Papers that mentioned: 23
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848