Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pbio.3000528

https://doi.org/10.1371/journal.pbio.3000528

Cited by: 74
Author(s): Hugo G. Hilton, Nimrod D. Rubinstein, Peter Janki, Andrea Ireland, Nicholas Bernstein, Nicole L. Fong, Kevin M. Wright, Megan Smith, David Finkle, Baby Martin-McNulty, Margaret Roy, Denise M. Imai, Vladimir Jojic, Rochelle Buffenstein
Published: over 4 years ago

Software Mentions 10

bioconductor: fgsea

Fast Gene Set Enrichment Analysis
Papers that mentioned: 150

bioconductor: SIM

Integrated Analysis on two human genomic datasets
Papers that mentioned: 554

cran: castor

Efficient Phylogenetics on Large Trees
Papers that mentioned: 5

cran: gplots

Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122

cran: lme4

Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267

cran: nnet

Feed-Forward Neural Networks and Multinomial Log-Linear Models
Papers that mentioned: 296

cran: rsvd

Randomized Singular Value Decomposition
Papers that mentioned: 2

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

pypi: analysis

Source code analysis of Python programs
Papers that mentioned: 2,036

pypi: castor

Assemble Git repos into a deployable tree of code.
Papers that mentioned: 5