Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.7016.2

https://doi.org/10.12688/f1000research.7016.2

From reads to regions: a Bioconductor workflow to detect differential binding in ChIP-seq data

Cited by: 16
Author(s): Aaron T. L. Lun
Published: almost 9 years ago

Software Mentions 7

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
bioconductor: csaw
ChIP-Seq Analysis with Windows
Papers that mentioned: 29
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
pypi: create
a simple package
Papers that mentioned: 9
pypi: dir
czda1100 demo
Papers that mentioned: 4
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233