Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.19675.1

https://doi.org/10.12688/f1000research.19675.1

Large-scale sequence comparisons with sourmash

Cited by: 103
Author(s): Pierce Nt, Luiz Irber, Taylor Reiter, Phillip T. Brooks, Brown Ct
Published: over 5 years ago

Software Mentions 8

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
cran: migrate
Create Credit State Migration (Transition) Matrices
Papers that mentioned: 25
pypi: conda
OS-agnostic, system-level binary package manager.
Papers that mentioned: 92
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
pypi: khmer
khmer k-mer counting library
Papers that mentioned: 110
pypi: migrate
A simple language agnostic database migration tool
Papers that mentioned: 25
pypi: sourmash
tools for comparing biological sequences with k-mer sketches
Papers that mentioned: 10