Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.12688/f1000research.12223.1
https://doi.org/10.12688/f1000research.12223.1
Cited by: 47
Author(s): Leonardo Collado‐Torres, Abhinav Nellore, Andrew E. Jaffe
Published: over 6 years ago
Software Mentions 14
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics dataPapers that mentioned: 2,223
bioconductor: derfinder
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approachPapers that mentioned: 6
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: GenomicRanges
Representation and manipulation of genomic intervalsPapers that mentioned: 323
bioconductor: regionReport
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR resultsPapers that mentioned: 2
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browserPapers that mentioned: 107