Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s42523-020-00039-3

https://doi.org/10.1186/s42523-020-00039-3

Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata

Cited by: 20
Author(s): H. Pieter J. van Veelen, Joana Falcão Salles, Kevin D. Matson, Marco van der Velde, B. Irene Tieleman
Published: over 4 years ago

Software Mentions 10

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
cran: lmerTest
Tests in Linear Mixed Effects Models
Papers that mentioned: 1,865
cran: multcomp
Simultaneous Inference in General Parametric Models
Papers that mentioned: 1,558
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: phia
Post-Hoc Interaction Analysis
Papers that mentioned: 90
cran: rptR
Repeatability Estimation for Gaussian and Non-Gaussian Data
Papers that mentioned: 132
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105