An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s40168-019-0650-5

https://doi.org/10.1186/s40168-019-0650-5

Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Cited by: 93
Author(s): Alessio Tovaglieri, Alexandra Sontheimer-Phelps, Annelies Geirnaert, Rachelle Prantil‐Baun, Diogo M. Camacho, David B. Chou, Hossein Baharvand, Tomás de Wouters, Magdalena Kasendra, Michael Super, Mark Cartwright, Camilla A. Richmond, David T. Breault, Christophe Lacroix, Donald E. Ingber
Published: over 6 years ago

Software Mentions 4

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
Very Likely Science (75)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
pypi: bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
Papers that mentioned: 43
Very Likely Science (100)
pypi: custom
Custom self carry
Papers that mentioned: 1,363
Very Likely Science (65)