Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-016-0162-5

https://doi.org/10.1186/s40168-016-0162-5

Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains

Cited by: 54
Author(s): Yemin Lan, Gail Rosen, Ruth Hershberg
Published: over 8 years ago

Software Mentions 2

pypi: EMIRGE
EMIRGE reconstructs full length sequences from short sequencing reads
Papers that mentioned: 94
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306