Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13229-019-0262-8

https://doi.org/10.1186/s13229-019-0262-8

Cited by: 25
Author(s): Jaume Forés-Martos, Ferrán Catalá-López, Jon Sánchez-Valle, Kristina Ibáñez, Héctor Tejero, Helena Palma-Gudiel, Joan Climent, Véra Pancaldi, Lourdes Fañanás, Celso Arango, Mara Parellada, Anaı̈s Baudot, Daniel Vogt, John L.R. Rubenstein, Alfonso Valencia, Rafael Tabarés‐Seisdedos
Published: about 5 years ago

Software Mentions 9

bioconductor: affy
Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: lumi
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Papers that mentioned: 238
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
cran: gProfileR
Interface to the 'g:Profiler' Toolkit
Papers that mentioned: 56
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: analysis
Source code analysis of Python programs
Papers that mentioned: 2,036