Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13104-019-4473-z

https://doi.org/10.1186/s13104-019-4473-z

RepViz: a replicate-driven R tool for visualizing genomic regions

Cited by: 0
Author(s): Thomas Faux, Kalle T. Rytkönen, Asta Laiho, Laura L. Elo
Published: over 5 years ago

Software Mentions 8

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
bioconductor: GenVisR
Genomic Visualizations in R
Papers that mentioned: 54
bioconductor: ggbio
Visualization tools for genomic data
Papers that mentioned: 53
bioconductor: Gviz
Plotting data and annotation information along genomic coordinates
Papers that mentioned: 134
bioconductor: RepViz
Replicate oriented Visualization of a genomic region
Papers that mentioned: 1
bioconductor: Sushi
Papers that mentioned: 18
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203