Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13104-019-4471-1

https://doi.org/10.1186/s13104-019-4471-1

Shiny-Seq: advanced guided transcriptome analysis

Cited by: 26
Author(s): Zenitha Sundararajan, Rainer Knoll, Peter Hombach, Matthias Becker, Joachim L. Schultze, Thomas Ulas
Published: over 5 years ago

Software Mentions 4

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: fdrtool
Estimation of (Local) False Discovery Rates and Higher Criticism
Papers that mentioned: 124
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307