Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13100-019-0180-5

https://doi.org/10.1186/s13100-019-0180-5

Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements

Cited by: 20
Author(s): Nicky Chung, G. M. Jonaid, Sophia Quinton, Austin Ross, Corinne E. Sexton, Adrian Alberto, Cody Clymer, Daphnie Churchill, Omar Navarro Leija, Mira V. Han
Published: about 5 years ago

Software Mentions 6

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: TEtranscripts
Tools for estimating differential enrichment of Transposable Elements and other highly repetitive regions
Papers that mentioned: 14