Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-021-00908-9

https://doi.org/10.1186/s13073-021-00908-9

scGRNom: a computational pipeline of integrative multi-omics analyses for predicting cell-type disease genes and regulatory networks

Cited by: 16
Author(s): Ting Jin, Peter Rehani, Mufang Ying, Jiawei Huang, Shuang Liu, Panagiotis Roussos, Daifeng Wang
Published: over 3 years ago

Software Mentions 7

bioconductor: GENIE3
GEne Network Inference with Ensemble of trees
Papers that mentioned: 172
bioconductor: GenomicInteractions
Utilities for handling genomic interaction data
Papers that mentioned: 10
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: motifbreakR
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
Papers that mentioned: 13
bioconductor: motifmatchr
Fast Motif Matching in R
Papers that mentioned: 5
bioconductor: TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) Analysis
Papers that mentioned: 33
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512