Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-020-00731-8

https://doi.org/10.1186/s13073-020-00731-8

Integrative -omics and HLA-ligandomics analysis to identify novel drug targets for ccRCC immunotherapy

Cited by: 28
Author(s): Anna Reustle, Moreno Di Marco, Carolin Meyerhoff, Annika Nelde, Juliane S. Walz, Stefan Winter, Siahei Kandabarau, Florian Büttner, Mathias Haag, Linus Backert, Daniel J. Kowalewski, Steffen Rausch, Jörg Hennenlotter, Viktoria Stühler, Marcus Scharpf, Falko Fend, Arnulf Stenzl, Hans‐Georg Rammensee, Jens Bedke, Stefan Stevanović, Matthias Schwab, Elke Schaeffeler
Published: over 4 years ago

Software Mentions 9

bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: Wave
Whole Architecture Verification
Papers that mentioned: 244