Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-016-0285-0

https://doi.org/10.1186/s13073-016-0285-0

Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

Cited by: 55
Author(s): Chan Zhou, Samuel R. York, Jennifer Y. Chen, Joshua V. Pondick, Daniel L. Motola, Raymond T. Chung, Alan C. Mullen
Published: over 8 years ago

Software Mentions 11

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: made4
Multivariate analysis of microarray data using ADE4
Papers that mentioned: 86
cran: CPAT
Change Point Analysis Tests
Papers that mentioned: 299
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: ROSE
Random Over-Sampling Examples
Papers that mentioned: 131
pypi: browser
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125
pypi: CPAT
CPAT (Coding Potential Assessment Tool)
Papers that mentioned: 299
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: mcl
Python wrapper for mcl library
Papers that mentioned: 37
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017