Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13072-020-00343-x

https://doi.org/10.1186/s13072-020-00343-x

BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks

Cited by: 29
Author(s): Lőrinc Sándor Pongor, Jacob M. Gross, Roberto Vera Alvarez, Junko Murai, Sang‐Min Jang, Hongliang Zhang, Christophe E. Redon, Haiqing Fu, Shar-yin N. Huang, Bhushan Thakur, Adrian Baris, Leonardo Mariño‐Ramírez, David Landsman, Mirit I. Aladjem, Yves Pommier
Published: over 4 years ago

Software Mentions 13

cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
cran: Replication
Test Replications by Means of the Prior Predictive p-Value
Papers that mentioned: 10
cran: shiny
Web Application Framework for R
Papers that mentioned: 127
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
pypi: caller
Set a Python property using a function call
Papers that mentioned: 27
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: picard
The next generation MusicBrainz tagger
Papers that mentioned: 243
pypi: shiny
A web development framework for Python.
Papers that mentioned: 127