Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-021-02482-0
https://doi.org/10.1186/s13059-021-02482-0
The influence of the gut microbiome on BCG-induced trained immunity
Cited by: 15
Author(s): Martin Stražar, Vera P. Mourits, Valerie A C M Koeken, L. Charlotte J. de Bree, Simone J.C.F.M. Moorlag, Leo A. B. Joosten, Reinout van Crevel, Hera Vlamakis, Mihai G. Netea, Ramnik J. Xavier
Published: about 3 years ago
Software Mentions 3
cran: pvclust
Hierarchical Clustering with P-Values via Multiscale Bootstrap ResamplingPapers that mentioned: 442
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306
pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomesPapers that mentioned: 144