Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-021-02443-7
https://doi.org/10.1186/s13059-021-02443-7
Technology dictates algorithms: recent developments in read alignment
Cited by: 42
Author(s): Mohammed Alser, Jeremy Rotman, Dhrithi Deshpande, Kodi Taraszka, Huwenbo Shi, Pelin Icer Baykal, Haiou Yang, Victor Xue, S. P. Knyazev, Benjamin D. Singer, Brunilda Balliu, David Koslicki, Pavel Skums, Alexander Zelikovsky, Can Alkan, Onur Mutlu, Serghei Mangul
Published: about 3 years ago
Software Mentions 2
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306