Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02396-x

https://doi.org/10.1186/s13059-021-02396-x

Chromosome-level genome assembly of a regenerable maize inbred line A188

Cited by: 28
Author(s): Guifang Lin, Cheng He, Jun Zheng, Dal Hoe Koo, Ha Le, Huakun Zheng, Tej Man Tamang, Jianqing Lin, Yan Liu, Mingxia Zhao, Yangfan Hao, Frank McFraland, Bo Wang, Qin Yang, Haibao Tang, Donald R. McCarty, Hairong Wei, Myeong Je Cho, Sunghun Park, Heidi F. Kaeppler, Shawn M. Kaeppler, Yun-Jun Liu, Nathan M. Springer, Patrick S. Schnable, Guoying Wang, Frank F. White, Sanzhen Liu
Published: over 3 years ago

Software Mentions 4

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562