Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02376-1

https://doi.org/10.1186/s13059-021-02376-1

A systematic dissection of the epigenomic heterogeneity of lung adenocarcinoma reveals two different subclasses with distinct prognosis and core regulatory networks

Cited by: 15
Author(s): Chongze Yuan, Haojie Chen, Shiqi Tu, Hsin Yi Huang, Yunjian Pan, Xiuqi Gui, Muyu Kuang, Xuxia Shen, Qiang Zheng, Yang Zhang, Chao Cheng, Hui Hong, Xiaoting Tao, Yizhou Peng, Xingxin Yao, Fei-Long Meng, Hongbin Ji, Zongshu Shao, Yihua Sun
Published: over 3 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: MAnorm2
Tools for Normalizing and Comparing ChIP-seq Samples
Papers that mentioned: 1
cran: ROSE
Random Over-Sampling Examples
Papers that mentioned: 131
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: MAnorm2-utils
To pre-process a set of ChIP-seq samples
Papers that mentioned: 1