Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-1949-z

https://doi.org/10.1186/s13059-020-1949-z

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

Cited by: 173
Author(s): Christian H. Holland, Jovan Tanevski, Javier Perales-Patón, Jan Gleixner, Manu P. Kumar, Elisabetta Mereu, Brian A. Joughin, Oliver Stegle, Douglas A. Lauffenburger, Holger Heyn, Bence Szalai, Julio Sáez-Rodríguez
Published: almost 5 years ago

Software Mentions 6

bioconductor: AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
Papers that mentioned: 45
bioconductor: GENIE3
GEne Network Inference with Ensemble of trees
Papers that mentioned: 172
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: RcisTarget
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions
Papers that mentioned: 55
cran: umap
Uniform Manifold Approximation and Projection
Papers that mentioned: 24
pypi: umap
UNIST synthesis MAP solution
Papers that mentioned: 24