Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02216-8

https://doi.org/10.1186/s13059-020-02216-8

Histone modifications during the life cycle of the brown alga Ectocarpus

Cited by: 21
Author(s): Simon Bourdareau, Leïla Tirichine, Bérangère Lombard, Damarys Loew, Delphine Scornet, Yue Wu, Susana M. Coelho, J. Mark Cock
Published: almost 4 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: pyGenomeTracks
Command-line tool to make beautiful and reproducible genome browser snapshots
Papers that mentioned: 20