Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02162-5

https://doi.org/10.1186/s13059-020-02162-5

A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

Cited by: 58
Author(s): Brigitte T. Hofmeister, Johanna Denkena, Maria Colomé-Tatché, Yadollah Shahryary, Rashmi R. Hazarika, Jane Grimwood, Sujan Mamidi, Jerry Jenkins, Paul Grabowski, Avinash Sreedasyam, Shengqiang Shu, Kerrie Barry, Kathleen Lail, Catherine Adam, Anna Lipzen, Rotem Sorek, Dave Kudrna, Jayson Talag, Rod A. Wing, David W. Hall, Daniel Jacobsen, Gerald A. Tuskan, Jeremy Schmutz, Frank Johannes, Robert J. Schmitz
Published: about 4 years ago

Software Mentions 3

bioconductor: AlphaBeta
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Papers that mentioned: 7
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
pypi: trf
A parser and dumper for the fide approved tournament report format: trf
Papers that mentioned: 7