Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02139-4

https://doi.org/10.1186/s13059-020-02139-4

COCOA: coordinate covariation analysis of epigenetic heterogeneity

Cited by: 10
Author(s): John T. Lawson, Jason P. Smith, Stefan Bekiranov, Francine E. Garrett-Bakelman, Nathan C. Sheffield
Published: about 4 years ago

Software Mentions 5

bioconductor: chromVAR
Chromatin Variation Across Regions
Papers that mentioned: 46
bioconductor: COCOA
Coordinate Covariation Analysis
Papers that mentioned: 13
bioconductor: LOLA
Locus overlap analysis for enrichment of genomic ranges
Papers that mentioned: 56
bioconductor: pathwayPCA
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
Papers that mentioned: 4
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283