Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02048-6

https://doi.org/10.1186/s13059-020-02048-6

Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows

Cited by: 289
Author(s): Elena Denisenko, Belinda Guo, Matthew Jones, Rui Hou, Leanne de Kock, Timo Lassmann, Daniel Poppe, C Olivier, Rebecca K. Simmons, Ryan Lister, Alistair R.R. Forrest
Published: over 4 years ago

Software Mentions 5

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: SoupX
Single Cell mRNA Soup eXterminator
Papers that mentioned: 17
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: Harmony
Harmony Programming Language
Papers that mentioned: 504