Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02034-y

https://doi.org/10.1186/s13059-020-02034-y

APEC: an accesson-based method for single-cell chromatin accessibility analysis

Cited by: 11
Author(s): Bin Li, Young Li, Kun Li, Lianbang Zhu, Qiaoni Yu, Pengfei Cai, Jingwen Fang, Wen Zhang, Pengcheng Du, Chen Jiang, Jun Lin, Kun Qu
Published: over 4 years ago

Software Mentions 10

bioconductor: chromVAR
Chromatin Variation Across Regions
Papers that mentioned: 46
bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
bioconductor: SIMLR
Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)
Papers that mentioned: 40
cran: ROSE
Random Over-Sampling Examples
Papers that mentioned: 131
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: APEC
Single cell epigenomic clustering based on accessibility pattern
Papers that mentioned: 9
pypi: browser
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: SIMLR
Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning
Papers that mentioned: 40