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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-020-02024-0

https://doi.org/10.1186/s13059-020-02024-0

Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation

Cited by: 33
Author(s): Mayilaadumveettil Nishana, Caryn Ha, Javier Rodriguez-Hernaez, Ali Ranjbaran, Erica Chio, Elphège P. Nora, Sana Badri, Andreas Kloetgen, Benoit G. Bruneau, Aristotelis Tsirigos, Jane A. Skok
Published: about 5 years ago

Software Mentions 7

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
Very Likely Science (100)
cran: GenomicTools
Collection of Tools for Genomic Data Analysis
Papers that mentioned: 5
Very Likely Science (85)
cran: org
Organising Projects
Papers that mentioned: 54
Very Likely Science (90)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
Very Likely Science (75)
pypi: org
Papers that mentioned: 54
Unlikely Science (0)