Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02008-0

https://doi.org/10.1186/s13059-020-02008-0

scATAC-pro: a comprehensive workbench for single-cell chromatin accessibility sequencing data

Cited by: 24
Author(s): Wenbao Yu, Yasin Uzun, Qin Zhu, Changya Chen, Kai Tan
Published: over 4 years ago

Software Mentions 9

bioconductor: chromVAR
Chromatin Variation Across Regions
Papers that mentioned: 46
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GEM
GEM: fast association study for the interplay of Gene, Environment and Methylation
Papers that mentioned: 317
cran: mclust
Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
Papers that mentioned: 297
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: browser
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: Harmony
Harmony Programming Language
Papers that mentioned: 504
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203