Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1899-5

https://doi.org/10.1186/s13059-019-1899-5

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

Cited by: 166
Author(s): Cécile Monat, Sudharsan Padmarasu, Thomas Lux, Thomas Wicker, Heidrun Gundlach, Axel Himmelbach, Jennifer Ens, Chengdao Li, Gary J. Muehlbauer, Alan H. Schulman, Robbie Waugh, Ilka Braumann, Curtis Pozniak, Uwe Scholz, Klaus Mayer, Manuel Spannagl, Nils Stein, Martin Mascher
Published: almost 5 years ago

Software Mentions 3

pypi: BESST
Scaffolder for genomic assemblies.
Papers that mentioned: 42
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: Dovetail
A light-weight, multi-platform, build tool for Python with Continuous Integration servers like Jenkins in mind.
Papers that mentioned: 37