Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1891-0

https://doi.org/10.1186/s13059-019-1891-0

Improved metagenomic analysis with Kraken 2

Cited by: 2,359
Author(s): Derrick E. Wood, Jennifer Lu, Ben Langmead
Published: almost 5 years ago

Software Mentions 3

cran: mason
Build Data Structures for Common Statistical Analysis
Papers that mentioned: 6
pypi: mason
Python SQL query generation without the ORM.
Papers that mentioned: 6
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306