Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1874-1

https://doi.org/10.1186/s13059-019-1874-1

Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

Cited by: 2,100
Author(s): Christoph Hafemeister, Rahul Satija
Published: about 5 years ago

Software Mentions 6

bioconductor: BASiCS
Bayesian Analysis of Single-Cell Sequencing data
Papers that mentioned: 21
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: SCnorm
Normalization of single cell RNA-seq data
Papers that mentioned: 15
cran: sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
Papers that mentioned: 34
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512