An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-019-1805-1

https://doi.org/10.1186/s13059-019-1805-1

Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation

Cited by: 65
Author(s): Amanda J. Price, Leonardo Collado‐Torres, Н. А. Иванов, Wei Xia, Emily E. Burke, Joo Heon Shin, Ran Tao, Liang Ma, Yankai Jia, Thomas M. Hyde, Joel E. Kleinman, Daniel R. Weinberger, Andrew E. Jaffe
Published: almost 6 years ago

Software Mentions 18

bioconductor: BiocParallel
Bioconductor facilities for parallel evaluation
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bioconductor: bsseq
Analyze, manage and store bisulfite sequencing data
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bioconductor: bumphunter
Bump Hunter
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bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
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bioconductor: derfinder
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
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bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
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bioconductor: genefilter
genefilter: methods for filtering genes from high-throughput experiments
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bioconductor: limma
Linear Models for Microarray Data
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bioconductor: MethylSeekR
Segmentation of Bis-seq data
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bioconductor: SGSeq
Splice event prediction and quantification from RNA-seq data
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cran: DT
A Wrapper of the JavaScript Library 'DataTables'
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cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
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cran: MatrixEQTL
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
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cran: RColorBrewer
ColorBrewer Palettes
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cran: shiny
Web Application Framework for R
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cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
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pypi: shiny
A web development framework for Python.
Papers that mentioned: 127
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pypi: voom
A python message bus that you can put 4 million volts through.
Papers that mentioned: 136
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