Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1805-1

https://doi.org/10.1186/s13059-019-1805-1

Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation

Cited by: 65
Author(s): Amanda J. Price, Leonardo Collado‐Torres, Н. А. Иванов, Wei Xia, Emily E. Burke, Joo Heon Shin, Ran Tao, Liang Ma, Yankai Jia, Thomas M. Hyde, Joel E. Kleinman, Daniel R. Weinberger, Andrew E. Jaffe
Published: about 5 years ago

Software Mentions 18

bioconductor: BiocParallel
Bioconductor facilities for parallel evaluation
Papers that mentioned: 30
bioconductor: bsseq
Analyze, manage and store bisulfite sequencing data
Papers that mentioned: 38
bioconductor: bumphunter
Bump Hunter
Papers that mentioned: 46
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: derfinder
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
Papers that mentioned: 6
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: genefilter
genefilter: methods for filtering genes from high-throughput experiments
Papers that mentioned: 142
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MethylSeekR
Segmentation of Bis-seq data
Papers that mentioned: 33
bioconductor: SGSeq
Splice event prediction and quantification from RNA-seq data
Papers that mentioned: 14
cran: DT
A Wrapper of the JavaScript Library 'DataTables'
Papers that mentioned: 74
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: MatrixEQTL
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
Papers that mentioned: 81
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: shiny
Web Application Framework for R
Papers that mentioned: 127
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
pypi: shiny
A web development framework for Python.
Papers that mentioned: 127
pypi: voom
A python message bus that you can put 4 million volts through.
Papers that mentioned: 136