Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-019-1805-1
https://doi.org/10.1186/s13059-019-1805-1
Cited by: 65
Author(s): Amanda J. Price, Leonardo Collado‐Torres, Н. А. Иванов, Wei Xia, Emily E. Burke, Joo Heon Shin, Ran Tao, Liang Ma, Yankai Jia, Thomas M. Hyde, Joel E. Kleinman, Daniel R. Weinberger, Andrew E. Jaffe
Published: over 4 years ago
Software Mentions 18
bioconductor: BiocParallel
Bioconductor facilities for parallel evaluationPapers that mentioned: 30
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics dataPapers that mentioned: 2,223
bioconductor: derfinder
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approachPapers that mentioned: 6
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: genefilter
genefilter: methods for filtering genes from high-throughput experimentsPapers that mentioned: 142
bioconductor: SGSeq
Splice event prediction and quantification from RNA-seq dataPapers that mentioned: 14
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441
cran: MatrixEQTL
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix OperationsPapers that mentioned: 81
pypi: voom
A python message bus that you can put 4 million volts through.Papers that mentioned: 136